von Dahlen J.K., Schulz K., Nicolai J. and Rose L.E. (2023) Global expression patterns of R-genes in tomato and potato. Front. Plant Sci. 14:1216795. doi: 10.3389/fpls.2023.1216795 Link
Dumack, K., Feng, K., Flues, S., Sapp, M., Schreiter, S., Grosch, R., Rose, L.E., Deng, Y., Smalla, K., Bonkowski, M. (2022) What Drives the Assembly of Plant-associated Protist Microbiomes? Investigating the Effects of Crop Species, Soil Type and Bacterial Microbiomes. Protist 173 (2022) 125913 Link
Dumack, K., Sapp, M., von Steimker, T., Mänz, A.T., Rose, L.E., Bonkowski, M. (2021) A Call for Research: A Resource of Core Microbial Symbionts of the Arabidopsis thaliana Microbiome Ready and Awaiting Experimental Exploration. Phytobiomes Journal doi.org/10.1094/PBIOMES-11-20-0080-A Link
López-Sánchez, A., Bareth, G., Bolten, A., Rose, L.E., Mansfeldt, T., Sapp, M., Linstädter, A. (2021) Effects of declining oak vitality on ecosystem multifunctionality: Lessons from a Spanish oak woodland. Forest Ecol. Manag. 484 Link
Schnake, A., Hartmann, M., Schreiber, S., Malik, J., Brahmann, L., Yildiz, I., von Dahlen, J.K., Rose, L.E., Schaffrath, U., Zeier J. (2020) Inducible biosynthesis and immune function of the systemic acquired resistance inducer N-hydroxypipecolic acid in monocotyledonous and dicotyledonous plants. J. Exp. Bot. doi.org/10.1093/jxb/eraa317 Link
de Vries, S., Stukenbrock, E.H., Rose, L.E. (2020) Rapid evolution in plant–microbe interactions – an evolutionary genomics perspective. New Phytologist doi.org/10.1111/nph.16458 Link
Sapp, M., Tyborski, N., Linstädter, A., López Sánchez, A., Mansfeldt, T., Waldhoff, G., Bareth, G., Bonkowski, M., Rose, L.E. (2019) Site‐specific distribution of oak rhizosphere‐associated oomycetes revealed by cytochrome c oxidase subunit II metabarcoding. Ecol. Evol. 9: 10567-10581 Link
de Vries, S., de Vries J., Rose, L.E. (2019) The Elaboration of miRNA Regulation and Gene Regulatory Networks in Plant-Microbe Interactions. Genes 10: 310 Link
Richards, S., Rose, L.E. (2019) The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes. BMC Evolutionary Biology 19: 141 Link
Bahramisharif, A., Rose, L.E. (2019) Efficacy of biological agents and compost on growth and resistance of tomatoes to late blight. Planta 249: 799-813. Link
Rose, L.E., Overdijk, E.J.R., van Damme, M. (2019) Small RNA molecules and their role in plant disease. Eur. J. Plant Pathol. 153: 1-14. Link
Beddows, I., Rose, L.E. (2018) Factors determining hybridization rate in plants: A case study in Michigan. Perspect. Plant Ecol. 34: 51-60. Link
Frantzeskakis, L., von Dahlen, J.K., Panstruga, R., Rose, L.E. (2018) Rapid evolution in the tug-of-war between microbes and plants. New Phytologist 219: 12–14. Link
de Vries, S., de Vries, J., von Dahlen, J.K., Gould, S.B., Archibald, J.M., Rose, L.E., Slamovits, C.H. (2018) On plant defense signaling networks and early land plant evolution. Communicative & Integrative Biology. 11:3, 1-14. Link
de Vries, S., von Dahlen, J.K., Schnake, Anika, Ginschel, S., Schulz, B., Rose, L.E. (2018) Broad-spectrum inhibition of Phytophthora infestans by fungal endophytes. FEMS Microbiology Ecology: 94. Link
de Vries, S., Kukuk, A., von Dahlen, J.K., Schnake, A., Kloesges, T., Rose, L.E. (2018) Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for Phytophthora resistance. Proc. R. Soc. B 285: 20172560. Link
de Vries, S., de Vries, J., Teschke, H., von Dahlen, J.K., Rose, L.E., Gould, S.B. (2018) Jasmonic and salicylic acid response in the fern Azolla filiculoides and its cyanobiont. Plant Cell Environment. 41: 2530-2548. Link
Sapp, M., Ploch, S., Fiore-Donno, A.M., Bonkowski, M., Rose, L.E. (2018) Protists are an integral part of the Arabidopsis thaliana microbiome. Environmental Microbiology. 20: 30-43. Link
2013 - 2017
Beddows, I., Reddy, A., Kloesges, T., Rose, L.E. (2017) Population genomics in wild tomatoes - the interplay of divergence and admixture. Genome Biology and Evolution 9: 3023–3038. Link
de Vries, J., de Vries, S., Slamovits, C.H., Rose, L.E., Archibald, J.M. (2017) How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae? Plant and Cell Physiology 58: 934-945. Link
de Vries, S., von Dahlen, J.K., Uhlmann, C., Schnake, A., Kloesges, T., Rose, L.E. (2017) Signatures of selection and host adapted gene expression of the Phytophthora infestans RNA-silencing suppressor PSR2. Molecular Plant Pathology 18: 110-124. Link
Ploch, S., Rose, L.E., Bass, D., Bonkowski, M. (2016) High diversity revealed in leaf associated Protists (Rhizaria: Cercozoa) of Brassicaceae. Journal of Eukaryotic Microbiology 63: 635–641. Link
Heidel, A., Kiefer, C., Coupland, G., Rose, L.E. (2016) Pinpointing genes underlying annual/perennial transitions with comparative genomics. BMC Genomics 17: 921. Link
de Vries, S., Kloesges, T., Rose, L.E. (2015) Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae. Genome Biology and Evolution 7: 3307-3321. Link
Rauch, C., de Vries, J., Rommel, S., Rose, L.E., Woehle, C., Christa, G., Laetz, E.M., Waegele, H., Tielens, A.G.M., Nickelsen, J., Schumann, T., Jahns, P., Gould, S.B. (2015) Why it is time to look beyond algal genes in photosynthetic slugs. Genome Biology and Evolution 7: 2602-2607. Link
Grzeskowiak, L., Stephan, W., Rose, L.E. (2014) Epistatic selection and coadaptation in the Prf resistance complex of wild tomato. Infection, Genetics and Evolution 27: 456-471. Link
Mathew, L.A., Staab, P.A., Rose, L.E., Metzler, D. (2013) Why to account for finite-sites in population genetic studies and how to do this with Jaatha 2.0. Ecology and Evolution 3: 2647-3662. Link
2008 - 2012
Rose, L.E., Atwell, S., Grant, M., Holub, E.B. (2012) Parallel loss-of-function at the RPM1 bacterial resistance locus in Arabidopsis thaliana. Frontiers in Plant Science. DOI: 10.3389/fpls.2012.00287 Link
Hörger, A.C., Ilyas, M., Stephan, W., Tellier, A., van der Hoorn, R.A.L., Rose, L.E. (2012) Balancing selection at the tomato RCR3 Guardee gene family maintains variation in strength of pathogen defense. PLoS Genetics 8: e1002813. Link
Gossmann, J.A., Markmann, K., Brachmann, A., Rose, L.E., Parniske, M. (2012) Polymorphic infection and organogenesis patterns induced by a Rhizobium leguminosarum isolate from Lotus root nodules are determined by the host genotype. New Phytologist 196: 561-573. Link
Rose, L.E., Grzeskowiak, L., Hörger, A., Groth, M., Stephan, W. (2011) Targets of selection in a disease resistance network in wild tomatoes. Molecular Plant Pathology 12: 921-927. Link
Naduvilezhath, L., Rose, L.E., Metzler, D. (2011) Jaatha: A fast composite likelihood approach to estimate demographic parameters. Molecular Ecology 20: 2709–2723. Link
Tellier, A., Pfaffelhuber, P., Haubold, B., Naduvilezhath, L., Rose, L.E., Staedler, T., Stephan, W., Metzler, D. (2011) Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. PLoS One 6: e18155. Link
Hall, S., Allen, R.L., Baumber, R., Baxter, L., Bittner-Eddy, P.D., Fisher, K., Rose, L.E., Holub, E.B., Beynon, J.L. (2009) Maintenance of genetic variation in plants and pathogens involves complex network of gene-for-gene interactions. Molecular Plant Pathology 10: 449-457. Link
Allen, R.L., Meitz, J.C., Baumber, R.E., Hall, S.A., Rose, L.E., Beynon, J.L. (2008) Natural variation reveals key amino acids for recognition specificity between downy mildew effector and an Arabidopsis resistance gene. Molecular Plant Pathology 9: 511-523. Link
2003 - 2007
Rose, L.E., Michelmore, R.W., Langley, C.H. (2007) Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon): II. Population Genetics of Pto. Genetics 175: 1307-1319. Link
Rose, L.E., Langley, C.H., Bernal, A.J., Michelmore, R.W. (2005) Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon): I. Functional Analysis of Pto alleles. Genetics 171: 345-357. Link
Bernal, A., Pollack, J., Pan, Q., Rose, L.E., Kozik, A., Willits, N., Guittet, M., Kochetkova, E., Michelmore, R. (2005) Functional analysis of the plant resistance gene Pto using DNA shuffling. Journal of Biological Chemistry 280: 23073-23083. Link
Rehmany, A.P., Gordon, A., Rose, L.E., Allen, R.L., Armstrong, M.R., Whisson, S.C., Kamoun, S., Tyler, B.M., Birch, P.R.J., Beynon, J.L. (2005) Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 genes from two Arabidopsis lines. Plant Cell 17: 1839-1850. Link
Allen, R.L., Bittner-Eddy, P.D., Grenville-Briggs, L.J., Meitz, J.C., Rehmany, A.P., Rose L.E., Beynon, J.L. (2004) Host-parasite co-evolutionary conflict between Arabidopsis and downy mildew. Science 306: 1957-1960. Link
Rose, L.E., Bittner-Eddy, P.D., Langley, C.H., Holub, E.B., Michelmore, R.W., Beynon, J.L. (2004) The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana. Genetics 166: 1517-1527. Link
1998 - 2002
Roy, B.A., Kirchner, J.W., Christian, C.E., Rose, L.E. (2001) High disease incidence and apparent disease tolerance in a North American Great Basin plant community. Evolutionary Ecology 14: 421-438. Link
Oudemans, P., Alexander, H.M., Antonovics, J., Altizer, S., Thrall, P.H., Rose, L.E. (1998) The distribution of mating type bias in natural populations of the anther smut Ustilago violacea on Silene alba in Virginia. Mycologia 90: 372-381. Link